MIGS Cultured Bacterial/Archaeal sample from Lacto... - BioSample

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Result Filters

Identifiers: BioSample: SAMN00001501; Sample name: BCM-HMP0029; SRA: SRS001975

Organism: Lactobacillus paragasseri JV-V03
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus paragasseri

Attributes

strain	JV-V03
estimated size	2006000
local-scale environmental context	Homo sapiens-associated habitat [ENVO:00009003]
investigation type	missing
host taxonomy ID	9606 (9606)
environmental medium	biological product [ENVO:02000043]
number of replicons	not determined
reference for biomaterial	not determined
geographic location	not determined
broad-scale environmental context	terrestrial biome [ENVO:00000446]
latitude and longitude	not determined
environmental package	missing
collection date	not determined
host	Homo sapiens
isolation and growth condition	not determined
source material identifiers	BEI HM-104
project name	Lactobacillus gasseri JV-V03
isolation source	missing
misc_param: HMP supersite	urogenital_tract
project_type	Reference Genome
nucleic acid extraction	not determined
finishing strategy (depth of coverage)	Level 3: Improved-High-Quality Draft78.89x;10
sop	http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
sequencing method	454-GS-FLX
assembly	Newbler v. 2.0.0-Eclipse
misc_param: HMP body site	Vaginal

Description

Lactobacillus gasseri JVV03

Keywords: GSC:MIxS;MIGS:6.0

BioProjects: PRJNA543187
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PRJNA31487 Lactobacillus paragasseri JV-V03
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